MAVID
 | This article needs additional citations for verification. (March 2020) |
| MAVID | |
|---|---|
| Developers | Nicolas Bray (UC Berkeley), Lior Pachter (UC Berkeley) |
| Stable release | 2.0.4
|
| Operating system | UNIX, Linux, Mac |
| Type | Bioinformatics tool |
| Licence | Open source |
| Website | MAVID download |
MAVID is a multiple sequence alignment program suitable for the alignment of large numbers of DNA sequences.[1][2] The sequences can be small mitochondrial genomes or large genomic regions up to megabases long. The latest version is 2.0.4.
The program can be used through the MAVID web server or as a standalone program which can be installed with the source code.
Input/Output
This program accepts sequences in FASTA format.
The output format includes: FASTA format, Clustal, PHYLIP.
References
- ^ Dewey, Colin N. (2007), "Aligning Multiple Whole Genomes with Mercator and MAVID", in Bergman, Nicholas H. (ed.), Comparative Genomics, Methods in Molecular Biology, vol. 395, Humana Press, pp. 221–235, doi:10.1007/978-1-59745-514-5_14, ISBN 978-1-58829-693-1, PMID 17993677
- ^ Bray, Nicolas; Pachter, Lior (2003-07-01). "MAVID multiple alignment server". Nucleic Acids Research. 31 (13): 3525–3526. doi:10.1093/nar/gkg623. ISSN 0305-1048. PMC 169029. PMID 12824358.
- Bray, N.; Pachter, L. (2004), "MAVID: Constrained ancestral alignment of multiple sequences", Genome Research, 14 (4): 693–699, arXiv:q-bio/0311018, doi:10.1101/gr.1960404, PMC 383315, PMID 15060012.
External links
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