Anagnostopoulou taught for nine years, from 1995 to 2004, at the Turkish and Middle Eastern Studies Department of the University of Cyprus, and since 2004 she has taught in the Panteion University’s Political Science and History Department. She is currently an Associate Professor of History at the Panteion.[3]
She has taught as a visiting professor at many universities in Europe and America, and she has published extensively.[2] She was a visiting professor at New York University in 2000, at the University of Cyprus from 2008 to 2009, and at the School for Advanced Studies in the Social Sciences in 2011.[1] Her main research interests are nationalism in Greece, Turkey and Cyprus, and colonialism in Cyprus.[3]
From 2000 to 2003, Anagnostopoulou headed the Cypriot Foreign Ministry's research team on issues concerning Turkey and the Turkish-Cypriot community.[2] She is currently on the Board of the Greek Contemporary Social History Archives (ASKI), and is on the editorial board of The History (Greek: Τα Ιστορικά), an academic journal.[1]
"The ‘Nation’ of the Rum Sings of the Sultan: The Many Faces of Ottomanism" (L. Tanatar Baruh and V. Kechriotis (ed.), Economy and Society on Both Shores of the Aegean, Alpha Bank Historical Archives, 2010, pp. 79–105)
"The Europeanisation and de-Europeanisation of Islam", (H. Yilmaz and Cagla Aykac (ed.), Perceptions of Islam in Europe, Tauris, London, 2009)
"The Complexities of Greek Nationalism and Turkish Cypriots for their Release" ("Les complexités du nationalisme Grec et Turc à leur version Chypriote"; F. Tsimpiridou and D. Stamatopoulos (ed.), Οrientalism aux limites: De l’Empire Ottoman au Moyen Orient contemporaine, Κritiki, Athens, 2008, pp. 35–62)
"1919-1922: The Ethnarchismos of the Ecumenical Patriarchate in the Frame of the Great Idea" ("1919-1922: Ο εθναρχισμός του Οικουμενικού Πατριαρχείου στο πλαίσιο της Μεγάλης Ιδέας"; Istorica, Volume 25, (47/2007), pp. 373–420.)
"Bin Yasa Padisahimiz: The Millet-i Rum Singing the Praises of the Sultan in the Framework of Helleno-Ottomanism" (Archivum Ottomanicum: Mélanges en l’honneur d’Elizabeth A. Zachariadou, Harrassowitz Verlag, Wiesbaden, 2006, pp. 47–78)
"The problem of identities in the second half of the 20th century in Cyprus", (G. Bellingeri and M. Kappler (ed.), Cipro oggi, Casa Editrice Il Ponte, Venice, 2005, pp. 57–65)