Order of bacteria
The Mycobacteriales are an order of bacteria .[ 1] The current description is genome-based, per Gupta 2019 emendation. Most members produce mycolic acids .[ 3]
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN).[ 2]
Whole-genome based phylogeny[ 4]
16S rRNA based LTP _08_2023[ 5] [ 6] [ 7]
120 marker proteins based GTDB 08-RS214[ 8] [ 9] [ 10]
Mycobacteriales
Micromonosporineae
Corynebacteriineae
Terminology
Mycolata has been used as a non-taxonomic term for mycolic acid-containing Actinobacteria . Mycobacteriales includes all such species, but it also includes some without mycolic acid, making these two terms imperfect, paraphyletic, aliases.[ 11]
See also
References
^ a b Janke A. (1924). Allgemeine technische Mikrobiologie. I. Teil. Die Mikroorganismen [General Technical Microbiology. Part I. The Microorganisms. ] (1st ed.). Dresden and Leipzig: T. Steinkopf.
^ a b Euzéby JP, Parte AC. "Mycobacteriales " . List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 7, 2021 .
^ Gupta, Radhey S. (22 February 2019). "Commentary: Genome-Based Taxonomic Classification of the Phylum Actinobacteria" . Frontiers in Microbiology . 10 . doi :10.3389/fmicb.2019.00206 . PMC 6395429 . Mycolic acids are important constituents of the cell envelopes of most members.
^ Nouioui I, Carro L, García-López M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Markus Göker M (2018). "Genome-Based Taxonomic Classification of the Phylum Actinobacteria " . Front. Microbiol . 9 : 2007. doi :10.3389/fmicb.2018.02007 . PMC 6113628 . PMID 30186281 .
^ "The LTP" . Retrieved 20 November 2023 .
^ "LTP_all tree in newick format" . Retrieved 20 November 2023 .
^ "LTP_08_2023 Release Notes" (PDF) . Retrieved 20 November 2023 .
^ "GTDB release 08-RS214" . Genome Taxonomy Database . Retrieved 10 May 2023 .
^ "bac120_r214.sp_label" . Genome Taxonomy Database . Retrieved 10 May 2023 .
^ "Taxon History" . Genome Taxonomy Database . Retrieved 10 May 2023 .
^ Chun, J; Kang, S-O; Hah, Y C; Goodfellow, M (September 1996). "Phylogeny of mycolic acid-containing actinomycetes" . Journal of Industrial Microbiology & Biotechnology . 17 (3–4): 205–213. doi :10.1007/BF01574694 .
Terrabacteria BV1, BV3, BV5
others Cyanoprokaryota
Cyanobacteriota
"Margulisiibacteriota "
"Marinamargulisbacteria"
"Riflemargulisbacteria"
"Saganbacteria"
"Termititenacia"
Firmicutes BV3 Low GC
Bacillota
Bacillota A
"Clostridiia "
"Thermoanaerobacteria"
"Thermosediminibacteria"
Bacillota D
Bacillota E
"Sulfobacillia"
"Symbiobacteriia"
"Thermaerobacteria"
Bacillota G
"Hydrogenisporia"
Limnochordia
"Desulfotomaculota "
"Carboxydocellia"
"Carboxydothermia"
"Dehalobacteriia"
"Desulfitobacteriia"
"Desulfotomaculia"
"Moorellia"
"Peptococcia"
"Syntrophomonadia"
"Thermincolia"
"Halanaerobiaeota"
"Selenobacteria"
CPR group Thermotogida
Fusobacterida Hydrobacteria BV2, BV4
others