On 1 March 2018, Zemplín Michalovce announced the signing of Harutyunyan to a two-year contract.[1] Harutyunyan made his professional debut for Zemplín Michalovce against Senica on April 28, 2018.[2]
On 28 January 2021, Harutyunyan was released by Ararat-Armenia,[3] with Pyunik announcing his signing on 4 February 2021.[4] On 3 February 2023, Harutyunyan extended his contract with Pyunik, until the summer of 2024.[5]